> For the complete documentation index, see [llms.txt](https://docs.hits.ai/hyperlab-use-case/llms.txt). Markdown versions of documentation pages are available by appending `.md` to page URLs; this page is available as [Markdown](https://docs.hits.ai/hyperlab-use-case/use-case/visium-and-scrnaseq-cell-type-annotation-tams-cafs.md).

# 002. Visium and scRNAseq cell type annotation-TAMs, CAFs

Cell type annotation, including TAMs and CAFs, on 10x scRNA-seq and Visium spatial transcriptomics data.

## Use Case in HyperLab

<div align="center"><figure><img src="https://4290995292-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2Fc8jFSx45v33BUSaQuAOW%2Fuploads%2FfoIDAv8smiNgc9k8wF62%2Fuc-f1756387585063b9ade69345716a.png?alt=media" alt="01.png"><figcaption></figcaption></figure></div>

<div align="center"><figure><img src="https://4290995292-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2Fc8jFSx45v33BUSaQuAOW%2Fuploads%2FOrgvLKkLlgyEvcycZ6oW%2Fuc-86464e717fe6c78b5e99627f386b.png?alt=media" alt="02.png"><figcaption></figcaption></figure></div>

<div align="center"><figure><img src="https://4290995292-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2Fc8jFSx45v33BUSaQuAOW%2Fuploads%2FHPEfLKTmqaREKJGAXu7A%2Fuc-5692dfbf73659dfbf3e1c013d4a1.png?alt=media" alt="03.png"><figcaption></figcaption></figure></div>

<div align="center"><figure><img src="https://4290995292-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2Fc8jFSx45v33BUSaQuAOW%2Fuploads%2FmGwCMTosPtPrQvdkOK0N%2Fuc-d5bb9a099f7f8a181ae788e3528e.webp?alt=media" alt="04.png"><figcaption></figcaption></figure></div>

<div align="center"><figure><img src="https://4290995292-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2Fc8jFSx45v33BUSaQuAOW%2Fuploads%2FGBaOWU6txjeHLUf5IMoe%2Fuc-159ac93b59f32eec6dd89e10b0bc.webp?alt=media" alt="05.png"><figcaption></figcaption></figure></div>

<div align="center"><figure><img src="https://4290995292-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2Fc8jFSx45v33BUSaQuAOW%2Fuploads%2FJquUsVOUPBzUJmzV711L%2Fuc-887d5d06aa5cabbb47a9ea0b2876.png?alt=media" alt="06.png"><figcaption></figcaption></figure></div>

<div align="center"><figure><img src="https://4290995292-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2Fc8jFSx45v33BUSaQuAOW%2Fuploads%2FdSrwZZDKPhficbaKQUq3%2Fuc-53688857af48fe690520bdc170fa.png?alt=media" alt="07.png"><figcaption></figcaption></figure></div>

<div align="center"><figure><img src="https://4290995292-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2Fc8jFSx45v33BUSaQuAOW%2Fuploads%2F0B9udUrMJP0hrBJs27GT%2Fuc-ceef58e873681989232b4735a489.webp?alt=media" alt="08.png"><figcaption></figcaption></figure></div>

<div align="center"><figure><img src="https://4290995292-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2Fc8jFSx45v33BUSaQuAOW%2Fuploads%2FnG1RzggZIOTbd7wrX2IW%2Fuc-bba776cd1cd7d9e12121128bb070.webp?alt=media" alt="09.png"><figcaption></figcaption></figure></div>

## Artifacts

<div align="center"><figure><img src="https://4290995292-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2Fc8jFSx45v33BUSaQuAOW%2Fuploads%2FnIaznF664xRoowVwTZUi%2Fuc-57963b583ddad1ed10d8d713ec22.webp?alt=media" alt="scRNAseq_annotation.png"><figcaption></figcaption></figure></div>

<div align="center"><figure><img src="https://4290995292-files.gitbook.io/~/files/v0/b/gitbook-x-prod.appspot.com/o/spaces%2Fc8jFSx45v33BUSaQuAOW%2Fuploads%2FO6bUDJj3AV1R5b62Bqn4%2Fuc-a482a81fab8b78e4fb14585abaf1.webp?alt=media" alt="Visium_spatial_deconvolution.png"><figcaption></figcaption></figure></div>

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